• TOOLS YOU MIGHT WANT TO USE:
• EMBOSS sequence manipulation tools
•    Six Pack
• Genscan
• NCBI
• NSCAN/TWINSCAN
• UCSC Genome Browser
• Exam 2a
• Exam 2b
• Washington Univeristy Gene Checker
• Flu exercise
• FOSMID directory
• Handouts
• Human Genome Research Institute's intro to bioinformatics
• Using the UCSC genome browser:  MIT video tutorials:   

  UCSC Genome Browser: Locating Intron-Exon Boundaries (4:56)
  UCSC Genome Browser: Searching with BLAT (6:14)

   

• UCSC genome browser tutorial
• ENSEMBL
• Flybase
• JMOL
• Protein DataBank [PDB]
• Repeat Masker
• Washington University's Genomics Education Partnership

2.  Background info:  Nature Education

3.  Tools:

• Comparative Genomic Hybridization
• PWM.XLS [CH 2]
• HGNC [Ch 2; the link on the text website is wrong]

• http://webs.wofford.edu/mossre/password/videos/lander.mpg : Lab 1, as if it was a lecture in class!

• http://webs.wofford.edu/mossre/genomics_videos/

• http://webs.wofford.edu/mossre/password/videos/colbert_dna.wmv

• http://webs.wofford.edu/mossre/password/animations/sblot.mov

• **GEP POST-COURSE ASSESSMENT & QUIZ**
• Course info, reading list
• Problem sets
• Calendar
• Lab handouts
• Article: "From DNA of Family..."
• Article [chapter 3]:  "Researchers Compare Anthrax Genomes"
• Other articles/papers
• PowerPoint files